ABBA-Documentation
0.9.6

Home

  • ABBA - Aligning Big Brains & Atlases
  • How to cite ABBA

Installation

  • Installation
  • Fiji + ABBA plugin installation
  • QuPath + ABBA extension installation

Tutorial

  • Demo dataset
  • QuPath - Creating a project compatible with ABBA
  • Fiji - BDV Navigation and QuPath project import
  • Fiji - Slices selection and display
  • Fiji - Registration workflow
  • Fiji - Saving / Opening registrations results
  • Fiji - Exporting ABBA’s registration results
  • QuPath - Using ABBA’s registration in QuPath

Video tutorial

  • Video tutorial

Slides tutorial

  • Slides tutorial

Explanation

  • Which data source can be used by ABBA ?
  • ABBA state file and transformation specifications

FAQ

  • Frequent issues / Frequently asked questions
ABBA-Documentation
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