ABBA-Documentation

0.9.6

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ABBA - Aligning Big Brains & Atlases
How to cite ABBA

Installation

Installation
Fiji + ABBA plugin installation
QuPath + ABBA extension installation

Tutorial

Demo dataset
QuPath - Creating a project compatible with ABBA
Fiji - BDV Navigation and QuPath project import
Fiji - Slices selection and display
Fiji - Registration workflow
Fiji - Saving / Opening registrations results
Fiji - Exporting ABBA’s registration results
QuPath - Using ABBA’s registration in QuPath

Video tutorial

Video tutorial

Slides tutorial

Slides tutorial

Explanation

Which data source can be used by ABBA ?
ABBA state file and transformation specifications

FAQ

Frequent issues / Frequently asked questions

ABBA-Documentation

Slides tutorial
View page source

Slides tutorial

A step by step tutorial that details how to register a demo dataset. Workshop slides

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